PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00612g00210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 504aa    MW: 57393.2 Da    PI: 10.7825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00612g00210.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-071548438
                              S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
           Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                              W t+E+++l  av+++G+++W+ +a+++   Rtl+
  Peaxi162Scf00612g00210.1 15 WGTWEELILGGAVRRHGTNDWNVVASELR-SRTLY 48
                              9****************************.99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-5866IPR009057Homeodomain-like
PfamPF002492.1E-51561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-51567IPR009057Homeodomain-like
CDDcd001671.70E-41561No hitNo description
PROSITE profilePS500906.2841565IPR017877Myb-like domain
SuperFamilySSF473703.79E-18264375IPR001487Bromodomain
SMARTSM002976.4E-17271375IPR001487Bromodomain
CDDcd043691.55E-14274370No hitNo description
Gene3DG3DSA:1.20.920.102.9E-16274395IPR001487Bromodomain
PfamPF004392.4E-10280359IPR001487Bromodomain
PROSITE profilePS5001410.401286356IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEGGVGPMRK KMNWWGTWEE LILGGAVRRH GTNDWNVVAS ELRSRTLYPF RFTPQACKAR  60
YEDLRKRYSG CTAWFEELRK RRVEELKREL ERSESSIGSL ESKIERLKAE RERSGQIDYG  120
LSHTESPAPL TKSEDIESSM KDEAKDGLSA GSFTLDIRTH RSPASQIPTI PSSTETDLIK  180
LERSESCERN KIQRINEVTE AANGNGGAVR KRRGKRRRKD TVWDAKEGSI EESDNVCSTS  240
LASTSHCKEV LTSCDQSIRH SAASNHRGGL SRFRNDDLMR IFNSITQHEA AMVFRHRLDS  300
QKRARYKKMI RRHMDIEIVR SRLASWSIKT PGELFRDFLL LANNAMVFYS KRTREYKAAM  360
ALRDIVTRAY RQHYKGSYYK ATSSLLPFPT IGNPPGKPRS VRPRPSKDKL QAKYGNNVKD  420
ISAGTLGGQN HRPSDADSKV PLQSLLTAKK GSKRPGKIKR GAINESVNPQ TKVLAKEATQ  480
HNVRTKEDHI IKPVTKEKKR ARQK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481RKRYSGCTAWFEELRKRR
2211219RRGKRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009778975.10.0PREDICTED: uncharacterized protein LOC104228236 isoform X1
RefseqXP_016467287.10.0PREDICTED: uncharacterized protein LOC107789922 isoform X1
TrEMBLM1C1L50.0M1C1L5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.17e-15DNA-binding bromodomain-containing protein